Publications

Peer-reviewed Publications

Harmful Algal Blooms

Miyake Y, Onitsuka G (2025) Long-term statistics of the Karenia mikimotoi blooms in western Japan imply multidecadal intensification and phenological changes on the semi-national, regional, and local scales. Fisheries Science. https://doi.org/10.1007/s12562-025-01867-5
Mikado T, Jinno S, Hirai M, Tomaru Y, Onitsuka G, Miyake Y (2024) The relationship between Karenia mikimotoi red tide and the Kyucho in Uwajima Bay in autumn 2020. Nippon Suisan Gakkaishi 90(4):334–343 DOI: 10.2331/suisan.23-00058 (in Japanese with English Abstract)

Abalone

Miyake Y, Kimura S, Horii T, Kawamura T (2017) Larval dispersal of abalone and its three modes: a review. Journal of Shellfish Research 36(1):157-167 DOI: 10.2983/035.036.0116

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Asahi T, Kurogi H, Terui M, Onitsuka T, Miyake Y, Hayakawa J, Kawamura T, Takiguchi N, Hamaguchi M, Horii T (2013) Environmental factors affecting appearance of swimming larvae of large abalone species on the east coast of Sagami Bay, Japan. Bulletin of the Japanese Society of Fisheries Oceanography 77(1):10-20 (in Japanese with English Abstract)
Miyake Y, Kimura S, Kawamura T, Kitagawa T, Takahashi T, Takami H (2011) Population connectivity of Ezo abalone on the northern Pacific coast of Japan in relation to the establishment of harvest refugia. Marine Ecology Progress Series 440: 137-150 DOI: 10.3354/meps09348
Miyake Y, Kimura S, Kawamura T, Kitagawa T, Hara M, Hoshikawa H (2010) Estimating larval supply of Ezo abalone Haliotis discus hannai in a small bay using a coupled particle-tracking and hydrodynamic model: insights into the establishment of harvest refugia. Fisheries Science 76: 561-570 DOI: 10.1007/s12562-010-0260-4

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Miyake Y, Kimura S, Kawamura T, Horii T, Kurogi H, Kitagawa T (2009) Simulating larval dispersal processes for abalone using a coupled particle-tracking and hydrodynamic model: implications for refugium design. Marine Ecology Progress Series 387: 205-222 DOI : 10.3354/meps08086

Mussel

Yin S, Takeshige A, Miyake Y, Kimura S (2018) Selection of suitable coastal aquaculture sites using Multi-Criteria Decision Analysis in Menai Strait, UK. Ocean & Coastal Management 165: 268-279

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Morioka H, Kasai A, Miyake Y, Kitagawa T, Kimura S (2017) Food composition of blue mussels (Mytilus edulis) in the Menai Strait, UK based on physical and biochemical analyses. Journal of Shellfish Research 36(3): 659-668

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Spiny Lobster

Miyake Y, Kimura S, Itoh S, Chow S, Murakami K, Katayama S, Takeshige A, Nakata H (2015) Roles of vertical behavior in the open-ocean migration of teleplanic larvae: modeling approach to the larval transport of Japanese spiny lobster. Marine Ecology Progress Series 539:93-109 DOI: 10.3354/meps11499

Chow S, Jeffs A, Miyake Y, Konishi K, Okazaki M, Suzuki N, Abdullah MF, Imai H, Wakabayasi T, Sakai M (2011) Genetic isolation between the western and eastern Pacific populations of pronghorn spiny lobster Panulirus penicillatus. PloS one 6(12): e29280

Eel

Kimura S, Miyazaki S, Onda H, Kitagawa T, Miyake Y, Miller MJ, Tsukamoto K (2024)  Distribution and Stable Isotope Ratio Characteristics of Japanese Eel Leptocephali in Relation to Hydrographic Structure of Their Pacific Ocean Spawning Area. Fisheries Oceanography. https://doi.org/10.1111/fog.12671
Miyake Y, Tellier M, Takeshige A, Itakura H, Yoshida A, Yokouchi K, Shiozaki M, Kimura S (2023)  Coastal Water Temperature Difference, a Potential Predictor of Glass Eel Recruitment in Anguilla japonica during Non-meander Periods of the Kuroshio. Journal of Oceanography 79: 413–421. https://doi.org/10.1007/s10872-023-00681-w
Fukuda N, Yamamoto T, Yokouchi K, Kurogi H, Okazaki M, Miyake Y, Watanabe T, Chow S (2022) Active swimming and transport by currents observed in Japanese eels (Anguilla japonica) acoustically tracked in the western North Pacific. Scientific Reports 12: 3490
Itakura H, Miyake Y, Wakiya R, Kimura S. Environmental influences on late-summer individual Japanese eel diel activity and space utilization patterns in a shallow western Japan brackish lake. Fisheries Science 88: 29–43
Itakura H, Miyake Y, Kitagawa T, Sato T, Kimura S (2022) Large contribution of pulsed subsidies to a predatory fish inhabiting large stream channels. Canadian Journal of Fisheries and Aquatic Sciences 78: 144–153
Miyake Y, Tellier M, Takeshige A, Itakura H, Yoshida A, Kimura S (2020)  Past and lost influence of the Kuroshio on estuarine recruitment of Anguilla japonica glass eels. Journal of Oceanography 76: 259–270 DOI: 10.1007/s10872-020-00543-9
Arai K, Itakura H, Yoneta A, Kaifu K, Shirai K, Miyake Y, Kimura S (2019) Anthropogenic impacts on the distribution of wild and cultured Japanese eels in the Tone River watershed, Japan, from otolith oxygen and carbon stable isotopic composition. Environmental Biology of Fishes 102(11): 1405-1420

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Yoneta A, Itakura H, Arai K, Kaifu K, Yoshinaga T, Miyake Y, Kimura S (2019) Distribution of naturally recruited wild Japanese eels in Japan revealed by otolith stable isotopic ratios and document investigation. Nippon Suisan Gakkaishi 85(2): 150-161
Miyake Y, Takeshige A, Itakura H, Itoh H, Onda H, Yamaguchi A, Yoneta A, Arai K, Hane YV, Kimura S (2018) Predation on glass eels of Japanese eel Anguilla japonica in the Tone River Estuary, Japan. Fisheries Science 84(6): 1009-1014 DOI: 10.1007/s12562-018-1238-x
Itakura H, Arai K, Kaifu K, Shirai K, Yoneta A, Miyake Y, Secor DH, Kimura S (2018) Distribution of wild and stocked Japanese eels in the lower reaches of the Tone River watershed revealed by otolith stable isotopic ratios. Journal of Fish Biology 93: 805-813

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Itakura H, Miyake Y, Kitagawa T, Kimura S (2018) Site fidelity, diel and seasonal activities of yellow-phase Japanese eels (Anguilla japonica) in a freshwater habitat as inferred from acoustic telemetry. Ecology of Freshwater Fish 27: 737-751
Onda H, Miller MJ, Takeshige A, Miyake Y, Kuroki M, Aoyama J, Kimura S (2017) Vertical distribution and assemblage structure of leptocephali in the North Equatorial Current region of the western Pacific. Marine Ecology Progress Series 575: 119–136

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Chow S, Okazaki M, Watanabe T, Segawa K, Yamamoto T, Kurogi H, Tanaka H, Ai K, Kawai M, Yamamoto S, Mochioka N, Manabe R, Miyake Y (2015) Light-sensitive vertical migration of the Japanese eel Anguilla japonica revealed by real-time tracking and its utilization for geolocation. PLOS ONE 10(4): e0121801
Itakura H, Kaino T, Miyake Y, Kitagawa T, Kimura S (2015) Feeding, condition, and abundance of Japanese eels from natural and revetment habitats in the Tone River, Japan. Environmental Biology of Fishes 98(8): 1871-1888

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Sea Bass

Miyake Y, Itakura H, Takeshige A, Onda H, Yamaguchi A, Yoneta A, Arai K, Hane YV, Kimura S (2019) Multiple habitat use of Japanese sea bass Lateolabrax japonicus in the estuary region of the Tone River system, implied by stable isotope analysis. Ichthyological Research 66(1): 172-176  DOI: 10.1007/s10228-018-0655-2

Anchovy

Takeshige A, Miyake Y, Nakata H, Kitagawa T, Kimura S (2015) Simulation of the impact of climate change on the egg and larval transport of Japanese anchovy (Engraulis japonicus) off Kyushu Island, the western coast of Japan. Fisheries Oceanography 24: 445–462

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Takeshige A, Miyake Y, Nakata H, Kitagawa T, Kimura S (2013) Effect of wind stress for the catch of Japanese anchovy Engraulis japonicus off northwestern Kyushu, Japan. Fisheries Science 79(6):989-998

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Physical Oceanography

Itoh S, Kasai A, Takeshige A, Zenimoto K, Kimura S, Suzuki K, Miyake Y, Funahashi T, Yamashita Y, Watanabe Y (2016) Circulation and haline structure of a microtidal bay in the Sea of Japan influenced by the winter monsoon and the Tsushima Warm Current. Journal of Geophysical Research: Oceans. DOI: 10.1002/2015JC011441
Miyake Y, Kurogi H, Shimizu M (2013) Tsunami recorded in the eastern Sagami Bay after the Great East Japan Earthquake. Journal of Fisheries Technology 5(2): 175-178 (in Japanese with English Abstract)
Suzaki H, Miyake Y, Nakata H (2013) Change of oceanic conditions leading to the disappearance of hypoxic water from Omura Bay. Bulletin on Coastal Oceanography 51(1):79-89 (in Japanese with English Abstract)

Manuscripts in Preparation

  • Miyake Y, Onitsuka G. Multi-decadal (1990–2020) statistics and trends of Chattonella marina complex blooms in semi-national, regional, and local scales of western Japan: Implications of intensification and phenological changes. In Preparation

Book Chapters

  • Miyake Y (2017)  Rocky shore resources. In: Umi no ondanka : kawariyuku umi to ningen katsudō no eikyō. The Oceanographic Society of Japan (ed), Asakura Publishing Co., Ltd., Tokyo, Japan, pp 93-95 (in Japanese)

Doctoral Thesis

  • Miyake Y (2010) Studies on larval dispersal processes of large abalone in relation to establishment of harvest refugia. Doctoral thesis, The University of Tokyo

Scientific Reports (selected)

  • Yamakawa T, Miyake Y, Kuroki M, Kimura S (2016) Distribution of phyllosoma and puerulus larvae of panulirid and scyllarid lobsters in the tropical and subtropical Pacific Ocean during Leg 1-4, KH-16-4 Cruise. Hakuho Maru KH-16-4 Cruise Report, 109-114
  • Kimura S, Onda H, Miyake Y, Itakura H, Takeshige A, Arai K, Yoneta A, Kuroki M, Otake T, Tsukamoto K (2016) Distribution of Anguilla japonica leptocephali collected in the western North Pacific. Hakuho Maru KH-16-4 Cruise Report, 52-54
  • Onda H, Miyake Y, Itakura H, Takeshige A, Arai K, Yoneta A, Kimura S (2016) Distribution and feeding ecology of fish larvae in the North Equatorial Current. Hakuho Maru KH-16-4 Cruise Report, 101
  • Miyake Y, Kimura S (2013) Dispersal processes of phyllosoma larvae in the western North Pacific. Hakuho Maru KH-13-6 Leg.1, 2 Cruise Report, 47-48
  • Kimura S, Ito S, Kitagawa T, Nagae H, Kim HY, Kato Y, Miyake Y,  Zenimoto K, Yamaoka N, Miyazaki S (2006) Studies on the migration conditions of Japanese eel and bluefin tuna. Hakuho Maru KH-06-2 Leg.2,3,5 Cruise Report, 41-48

Presentations

International Meetings (oral presentations)

  • Miyake Y, Onitsuka G (2024) Multi-decadal trends in blooms of harmful algae Chattonella spp. in Japan. PICES 2024, Hawaii, U.S.A., November
  • Miyake Y, Onitsuka G (2023) Multi-decadal trends in Karenia mikimotoi blooms in Japan. 20th International Conference on Harmful Algae, Hiroshima, Japan, November
  • Miyake Y, Takeshige A, Itakura H, Yoshida A, Kimura S (2017) Recruitment mechanism of Anguilla japonica glass eels implied by 50-year catch and oceanographic data and model. The 1st UK International Eel Science Symposium, London, UK
  • Itakura H, Kitagawa T, Miyake Y, Kimura S (2017) Site fidelity, diel and seasonal activity of growth phase Japanese eel in the freshwater habitat inferred from acoustic telemetry. The 1st UK International Eel Science Symposium, London, UK
  • Miyake Y, Takeshige A, Itakura H, Yoshida A, Kimura S (2016) Shoreward intrusions of Kuroshio waters may influence the recruitment of a top predator in river ecosystems. PICES 2016 Annual Meeting, California, U.S.A.
  • Miyake Y, Takeshige A, Itakura H, Yoshida A, Kimura S (2016) Glass eels of Anguilla japonica may migrate into the coastal ocean using shoreward intrusions of Kuroshio water. 40th Annual Larval Fish Conference, Maryland, U.S.A.
  • Miyake Y, Kimura S, Itoh S, Chow S, Murakami K, Katayama S, Takeshige A, Nakata H (2015) Transport mechanisms in the larval migration of Japanese spiny lobster. 39th Annual Larval Fish Conference, Vienna, Austria
  • Takeshige A, Kimura S, Miyake Y, Nakata H, Kitagawa T (2014) Estimation of the future change of anchovy recruitment in response to global warming off western coast of Kyushu, Japan, PICES 2014 Annual Meeting, Yeosu, Republic of Korea
  • Kimura S, Kitagawa T, Miyazaki S, Zenimoto K, Miyake Y (2012) Characteristics of spawning migration and larval transport of the Japanese eel based on stable isotope analyses. 6th World Fisheries Congress, Edinburgh, Scotland
  • Kimura S, Miyake Y, Kawamura T, Kitagawa T (2011) Larval dispersal processes of abalone using a coupled particle tracking and hydrodynamic model for refugium design. 3rd AORI-KIOS Joint Symposium on Marine Science, Chiba, Japan
  • Miyake Y, Kimura S, Kawamura T, Horii T, Kurogi H, Kitagawa T (2009) Simulating dispersal processes of abalone larvae using a coupled particle-tracking and hydrodynamic model. 7th International Abalone Symposium, Pattaya, Thailand

International Meetings (poster presentations)

  • Miyake Y, Onitsuka G (2023) Toward field installation of a low-cost plankton imaging system for continuous monitoring and data acquisition of harmful algal blooms. 20th International Conference on Harmful Algae, Hiroshima, Japan, November (Poster)
  • Miyake Y, Onitsuka G (2021) The black tide (Kuroshio) potentially induces Karenia mikimotoi red tides. 19th International Conference on Harmful Algae, La Paz, Mexico (Virtual)
  • Itakura H, Miyake Y, Kitagawa T, Kimura S (2018) Site fidelity, diel and seasonal activities of yellow-phase Japanese eels (Anguilla japonica) in a freshwater habitat as inferred from acoustic telemetry. 32nd Annual Tidewater AFS Meeting, Beaufort and Morehead City, USA
  • Miyake Y, Kimura S, Itoh S, Chow S, Murakami K, Katayama S, Takeshige A, Nakata H (2015) Does vertical migratory behavior of spiny lobster larvae influence their open-ocean migration? Symposium on growth-survival paradigm in early life stages of fish: controversy, synthesis, and multidisciplinary approach, Yokohama, Japan
  • Takeshige A, Miyake Y, Nakata H, Kitagawa T, Kimura S (2015) Impact of climate change on the egg and larval transport of Japanese anchovy off Kyushu Island, the western coast of Japan. Symposium on growth-survival paradigm in early life stages of fish: controversy, synthesis, and multidisciplinary approach, Yokohama, Japan
  • Kimura S, Takeshige A, Miyake Y, Nakata H, Kitagawa T (2014) Impact of climate change on the egg and larval transport of Japanese anchovy Engraulis japonicus off western coast of Kyushu, Japan. PICES 2014 Annual Meeting, Yeosu, Republic of Korea